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When there are multiple tissue sections in a Xenium experiment, it is often impossible to have them lie exactly along the XY axis.
Current rectangular crop function results in inclusion of other b…
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Hi!
Really cool package that's easy to use. I've already compared it to some prior selections using geneBasis and think I'd like to switch over. One of the things I'm I'd like to make sure I unders…
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I am unable to install cellphonedb using the instructions on github and wanted to upload my data to your server for analysis. Could you please let me know when this will be available? Currently, I am…
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From Chris Shults (+ my edits for gEAR purposes)
gEAR would be most useful for users to compare their scRNASeq or scATACSeq data to for cell annotation. They should directly take the unlabeled clus…
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Thank you for the great pipeline! Following your intrinsic instructions, I have successfully run through the fantastic pipeline for Somatic SNV calling from scRNA-seq. However, I found that the cellS…
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**Project:**
Characterizing the transcriptome of individual cells is fundamental to understanding complex biological systems. Recent developments in single cell RNA sequencing (scRNA-seq) technologies…
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Dear EcoTyper team,
Hi, all! Hope you been well and thanks so much for sharing amazing tool.
I was following tutorials using new TCGA data with in-house scRNA-seq dataset.
Initially, I run Tuto…
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I hope you're doing well. I recently came across your paper, 'TRUST4: immune repertoire reconstruction from bulk and single-cell RNA-seq data,' published in Nature Methods. I was highly impressed by t…
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I tried to train a scRNA-seq data set with celltype category intersection between multiple data sets. I would like to ask if there are some data sets with a small amount of data that are recommended?
fscdc updated
5 months ago
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When I set the imputation parameter to F, I can run the following code normally:
countexp.Seurat 1
In addition: Warning message:
In asMethod(object) :
sparse->dense coercion: allocating vector o…