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Dear heng, thanks for the fantastic tool. I have some questions, can I use minimap2 to align pair-end 150bp short reads to assembled contig of these short reads, how is the performance? Or do you hav…
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https://github.com/admin-shell-io/aas-specs/tree/master/schemas/json#json-mapping-rules
does not link to chapter JSON Mapping rule but is identical to
https://github.com/admin-shell-io/aas-specs/tre…
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Dear Alex,
Briefly (see X.Log.final.out for 2 reference genomes X below), I've gotten unmapped percentages of 99.83% and 99.27% in mapping ~200M reads (for 8 samples of 2 species) of shark to argua…
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Hi JJ - great Page,
I believe it is worth adding information about the read balancer, especially since the Squid version will support OSDs of different sizes. Would you like to work with @ljflores an…
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From @tkphd
The lesson homepage lists the following prerequisites:
Familiarity with the Bash command shell, including concepts like pipes,
variables and loops.
Knowledge of bioinformatics fund…
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## Current Behavior
When the aliases file (default location `/qdrant/storage/aliases/data.json`) is non-valid JSON, Qdrant panics when it tries to parse it.
## Steps to Reproduce
1. Run Qdrant in…
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I'm trying to align a slew paired end 100 bp transcript sequences to a reference genome from NCBI with a gff (converted to gtf) file. However, my % of reads unmapped: too short is coming up in the 60%…
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As a result of the meeting on March 17, 2016, we are going to add a script to the pipeline that refines genotype assignments by collapsing the reference set to the sequences that map the most reads pe…
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sync storage is very limited
https://developer.mozilla.org/en-US/docs/Mozilla/Add-ons/WebExtensions/API/storage/sync
https://developer.mozilla.org/en-US/docs/Mozilla/Add-ons/WebExtensions/…
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## Context:
In ancient DNA studies, a popular field is to recover ancient pathogen genomes (e.g. [Yersinia pestis](http://dx.doi.org/10.1016/j.cub.2017.10.025)), i.e. the genomes of dead organisms …