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Hi,
Thanks for such a great package, and the new update!
I'm using cellchat to compare two datasets and the netVisual_heatmap() function to compare heatmaps for cell type interactions between al…
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We found the PTI signalling term yesterday, hooray!
so when this is done:
https://github.com/geneontology/go-ontology/issues/18033
please add synonyms to
GO:0002221 pattern recognition rece…
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Hi,
I have met a error which I saw many users met but none gave a solution.
The problem is, when I created and run cellchat using the Seurat::FindCluster column 'seurat_clusters' in meta.data, cell…
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Hi Peter
Looks like these Reactome pathway xrefs are missing:
gluconeogenesis (GO:0006094) = R-HSA-70263
fructose biosynthetic process (GO:0046370) = R-HSA-5652227
galactose catabolic process vi…
sjm41 updated
3 weeks ago
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Need to discuss eligibility with SCEA.
1. cell_line -> hIPSC -> sequencing
2. single-cell library prep. method = Fluidigm C1-based library preparation
3. mixed sample types: primary & hIPSCs
P…
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Dear CellChat developors,
I have a question about the function "Infer the cell-cell communication at a signaling pathway level". Can I use my geneset as a signaling pathway equal to the "Wnt "? If c…
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Hello everyone,
It seems that after generating a few graphs on CellChat, all of a sudden the graphs start taking a really long time to load, and then load incompletely--without labels. For example…
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Dear,
when I use cellchat ,I am wondering how to save multiple plots which produced from following code:
par(mfrow = c(1,2), xpd=TRUE)
netVisual_diffInteraction(cellchat, weight.scal…
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In some cases, a Reactome pathway doesn't have any reactions that are directly associated with it. Instead it has a collection of subpathways under it. In those cases, the parent gets imported as a si…
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For coming up with queries, it may help to use the cmap [here](https://github.com/NCI-Thesaurus/thesaurus-obo-edition/blob/master/docs/NCIT-Diagram.jpg) that shows all paths through the data. Below ar…