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Hello,
Executed code:
shapemapper --name example --target ../FASTA/RNA.fasta --out RNA_shapemap --amplicon --modified --R1 100mM_1M7_RNA_R1.fastq --R2 100mM_1M7_RNA_R2.fastq --untreated --R1 DM…
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Here you will find actionable items from all past [Open Source Mycetoma Meetings](https://github.com/OpenSourceMycetoma/Series-1-Fenarimols/issues/28). To be updated by all members once their designat…
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Hello,
Thanks for publishing this great method.
I am looking to generate new priors from a pilot data set consisting of a large number (>10K) of deeply sequenced cells (>100K reads/cell) from Ch…
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# Feature being added - Filtering!
Filter reads and alignments based on a flexible "mini language" specified in the TOML.
Would go into config TOML under the respective place for the filtering? I.e…
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Preferred Term: long-read RNA sequencing assay
Synonyms: long-read RNA-seq
Definition: An assay that determines the sequence of an RNA molecule using single-molecule technologies to allow longer rea…
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I'm trying to run your code and I saw the requirement is BLASR 2.0 but on the BLASR github page installing legacy BLASR isn't possible. So I installed the lastest version (BLASR 5.1) but that version …
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They have similar methods but are slightly different?
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Hi Ben,
I have been using DADA2 on illumina sequenced COI data for the last year and it has become the backbone of my bioinformatics pipeline. We now have a PhD student in our group developing meta…
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I am trying to run Canu to assemble some nanopore reads. I have attempted some fixes from other threads but I am a little stumped on how to resolve this. Does anyone have any suggestions?
Command:
…
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I've been running canu on a fish genome ~600 MB, and now I keep getting Illegal division by zero... I'm using a linux server and canu snapshot v2.3. Here's my command:
`/data/canu/build/bin/canu…