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cc @bluegenes
working version here, https://hackmd.io/-sFCAl_3T1qSqH_GvV_pvw - add stuff there, or add thoughts in comments below, but please do not edit this header except to update it with the c…
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Hi,
I have been struggling with finding an option to run on the sourmash gather command using multiple threads. Is this not available?
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`sourmash 2.2.1.dev5+g7468bfe dev_0 `
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thanks to @luizirber's nixos setup, we're already logging with `caddy`
log files on the `mastiff` server: `wc -l /var/log/caddy/access-*`
```
3868 /var/log/caddy/access-branchwater.sourmash.b…
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$ ./mastiff sequence.fasta > matches.csv
[2023-07-15T04:19:00Z INFO mastiff_client] Preparing signature
[2023-07-15T04:19:00Z INFO mastiff_client] Sending request to https://mastiff.sourmash.bio
…
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Hello,
Hope you're doing well! I was wondering if it would be possible in the future to support custom moltypes, e.g. if I wanted to do a riff on the Dayhoff alphabet where arginines were a special …
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per https://github.com/sourmash-bio/sourmash_plugin_branchwater/issues/152#issuecomment-1834138009, the conda-forge recipe at https://github.com/conda-forge/sourmash_plugin_branchwater-feedstock only …
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while I'm thinking about it... it would be nice to move towards genuinely interactive search, gather,and MAGsearch.
greyhound #1226 and greyhound.sourmash.bio/ is super cool, of course, but it's "o…
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they're pretty out of date and not super well tested. I think I'd do it better next time I have a use case for these kinds of functionality...
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Traceback (most recent call last):
File "/home/momo/mambaforge/envs/BacterialTyper_mamba/bin/BacterialTyper", line 12, in
import BacterialTyper.modules
File "/home/momo/mambaforge/envs/Bac…