-
**Describe the problem**
T-cells are an integral part of the adaptive immune system, whose survival, proliferation, activation and function are all governed by the interaction of their T-cell recepto…
-
The IEDB team is requesting the following terms to better organize 'binding datum':
**categorical binding datum**
_textual definition_: A binding datum about two or more material entities to form …
-
In GitLab by @grst on Apr 2, 2020, 14:45
null
-
Hello again,
I see unexpected distance values in my own data, which I was able to reproduce using the standard TCRdist3 example with partially duplicated entries:
```python
df = pd.read_csv("da…
-
For example, from this paper: [Predicting immunogenic tumour mutations by combining mass spectrometry and exome sequencing](https://www.ncbi.nlm.nih.gov/pubmed/25428506):
Gene | Peptide | MHC allel…
-
When calling `scirpy.io.read_10x_vdj()` with `filtered=False` it might be useful to add a categorical attribute like `adata.obs["has_ir_filtered"]` to distinguish those cells (or perhaps better use th…
-
Hi,
I have populated the xlx spreadsheet template with antigen-specific TCR repertoire data for responses towards a deamidated gluten epitope in celiac patients and a CMV pp65 epitope in healthy in…
-
Hello
Our cluster computing group has installed your software via docker on our server like below which directed me to R environment
```
module load singularity/3.2.1
singularity pull antigen.…
-
In GitLab by @grst on Jan 30, 2020, 12:59
Tools are functions that work with the data parsed from 10x/tracer and add either
* new columns to `obs`
* new matrices to `obsm` (e.g. distance matrice…
-
Hi Koshlan!
I have more of an inquiry rather than an issue for you.
First of all, thank you for publishing and maintaining TCRdist2. I came across Bradley's paper a few months ago and I have been…