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kmayerb
/
tcrdist3
flexible CDR based distance metrics
MIT License
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compute_sparse_rect_distances replaces 0 values with -1
#104
liel-cohen
closed
3 weeks ago
1
A to P change in CDR3 but no effect on distance
#103
andreas-wilm
opened
1 month ago
0
Tiny issue: hcluster_tally function uses np.int, throws up error
#102
JoshYeeXJ
opened
2 months ago
0
BCR distance
#101
ChangLu92
opened
2 months ago
0
error in import preprocess_10X
#100
rimanpreetkaur
opened
3 months ago
2
TRBV6-2*01?
#99
esford3
opened
4 months ago
1
Create python-app-py311.yml
#98
agartland
closed
4 months ago
0
Add rhesus functionality
#97
kmayerb
closed
4 months ago
0
Added support on pandas version 1.5.0+ due to the issue caused by **pandas.DataFrame.iteritems**.
#96
OumaeKaede
opened
4 months ago
2
Issue with metaclonotypes
#95
jsh75
opened
7 months ago
0
Tcrdist working with sample data but not with my data
#94
rutha32
closed
8 months ago
2
Error with using with the newest version of python
#93
rutha32
closed
8 months ago
2
Clustering based on aminoacid sequences alone
#92
raphaeltrevizani
opened
9 months ago
0
Usage question
#91
ndrubins
closed
11 months ago
1
Lost Clones
#90
TheRaspberryFox
opened
11 months ago
1
Poor efficiency on large dataset
#89
pdevashishmda
opened
1 year ago
0
build_tree not working with gd TCRs
#88
sschattgen
closed
1 year ago
1
Convention N/C terminal
#87
lisadratva
opened
1 year ago
0
Identifying which clones cluster where on a tree
#86
TheRaspberryFox
closed
1 year ago
2
Keep information about TCR in the TCRdist matrix
#85
CharlineJnnt
closed
1 year ago
2
How to compare clonal similarity between different groups?
#84
sc30301
closed
1 year ago
1
Wrong/redundant entries in db file?
#83
nh3
opened
1 year ago
0
Guidance on using find_metaclonotypes (specifically on bkgd_cntl_nn2 function)
#82
elulu3
closed
1 year ago
1
Several (more?) missing TCR chains
#81
KJMaroney
opened
1 year ago
0
amino-acid consensus sequence
#80
PaulDanPhillips
opened
1 year ago
0
Provide an alternative bkgd_cntl_nn function (bkgd_cntl_nn3), with reduced memory usage and increased speed
#79
sgp79
opened
1 year ago
3
issue with running Radius
#78
QianhuiXu
opened
1 year ago
3
Memory usage of regex testing
#77
sgp79
opened
1 year ago
2
KeyError: 'pmhc_a_aa'
#76
Tianran1
opened
1 year ago
7
Installation error: File name too long
#75
canuckafar
opened
1 year ago
3
tr.pw_beta vs tr.pw_cdr3_b_aa
#74
psimps21
opened
1 year ago
0
Problem installing due to fisher
#73
TejasMenon
opened
1 year ago
1
some basic questions on tcrdist3
#72
SheahLinLee
closed
1 year ago
3
Add informative Error Message when sparse matrix is passed to trcrdist.public._neighbors_fixed_radius
#71
kmayerb
opened
2 years ago
0
Installing with python 3.9.10, Avoid Numpy/Numba/Fisher package conflicts
#70
kmayerb
opened
2 years ago
1
Cannot import hcluster_diff, member_summ, or plot_hclust_props
#69
psimps21
closed
2 years ago
6
What to do with multiple prodcutive alpha or beta chains
#68
emjbishop
closed
2 years ago
2
Installation files not found
#67
wukevin
closed
2 years ago
7
ValueError: numpy.ndarray size changed, may indicate binary incompatibility. Expected 88 from C header, got 80 from PyObject
#66
swapnil-dk
closed
2 years ago
4
Information about metaclonotype centers
#65
aoki0623mriid2
closed
1 year ago
2
Error in calcuating "Radius"
#64
aoki0623mriid2
closed
2 years ago
3
[Request] Improve Documentation for tabulate
#63
gcohenJH
opened
2 years ago
2
About distance threshold
#62
showteeth
opened
2 years ago
1
Distances without cdr3_a_nucseq and cdr3_b_nucseq
#61
andreas-wilm
closed
2 years ago
3
Unexpected distance values for partially duplicated entries
#60
andreas-wilm
closed
2 years ago
6
Some distances silently not computed (for identical entries)
#59
andreas-wilm
closed
2 years ago
4
Added a missing argument when calling _synthesize_vj_matched_background
#58
zozo123
closed
2 years ago
4
ValueError: zero-size array to reduction operation maximum which has no identity
#57
Lihua1990
closed
2 years ago
4
Question: Combined distance matrix for alpha and beta
#56
andreas-wilm
closed
2 years ago
8
Error in "Hello tcrdist3"
#55
aoki0623mriid2
closed
2 years ago
3
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