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Hi, thank you for developing such an excellent software.
### pVACseq: Discrepancy between {sample_id}.all_epitopes.tsv and {sample_id}.fasta ?
#### Description
I have successfully run pVACse…
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Hi! I ran into this error:
“Error in checkGrep(grep(".A.txt", files)) :
Improper folder specification; file missing / extra file present. See documentation
Calls: importMito -> checkGrep
E…
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Hi
I am using version 1.4.2 for SNV analysis. I encounter the issue in Part 4: Filtering the same SNVs from replicates. Which gives me SNV-Singlets but 7.SNV-final only gives empty TSV file. The er…
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Hello,
There's a large number of invalid linestrings in the `_USA.tsv` file that only contain a single point or are self-referencing.
**Only about 88% of the rows in the US file are valid line s…
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Je pense que les lignes suivantes :
```
1' (article le) 158 1.465
1' (article la) 156 1.319
1' (pronom le) 102 458
1' (pronom la) 69 200
1' (dans : l'on) 28 48
```
Devraient être :
```
…
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I followed the instructions in the `README.md`, but when running the `import.sh` script I received the following error:
```
(indra) sgrein@iru-code:~/Code/indra/indra_cogex$ python -m indra_cogex.…
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There is already [mnemocards](https://github.com/guiferviz/mnemocards) but the command line tool is too cryptic for normal people. They need a nice web application.
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Hello there!
I am interesting on using StrainFacts, but for various reasons using a metagenotyper like GT-Pro does not work well for my data. My plan is to profile SNPS using GATK, and extract the …
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Hi,
I was using ppanggolin 1.2.105 before, and got the "start" and "stop" contig borders of the regions_of_plasticity file.
With the new version (2.0.5) I only get the "start" and "stop" CDS of …
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Hello. Below is a log from an FCS-GX run that crashed with the message `gzip: stdin: No data available`. What has happened here, and how to prevent this problem?
```
================================…