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Bonjour @julibinho @SamuelLlm @NataliyaSokolovska
I have a question for some clear aims of our project,
I've thought that the purpose is to see common significant results of both clustering with…
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Hi,
i am using iDEp for the first time on [](http://bioinformatics.sdstate.edu/idep/).
I am using a file with RNAseq data (log2FPKM) from 5 murine tumour samples.
Everything works fine up to DE…
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Hi,
I analyze the tutorial data provided using the latest PyClone version. However, I ended up with 9 clusters which is different from results of the nature paper published in 2014.
I have some q…
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**Submitting authors:** Tiffany Timbers
**Repository:** https://github.com/ttimbers/breast_cancer_predictor
**Report link:** https://github.com/ttimbers/breast_cancer_predictor/blob/master/doc/brea…
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Hi @GeorgescuC
I am running infercnv to differentiate the cancer cells from fibroblasts in a tumour that has extensive EMT. The tumour cells are Trp53 deleted. My question is which is best to use …
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I am doing Brain Tumour Segmentation. I am analysing BRATS 2020 dataset. If I hover over a particular co-ordinate (let the co-ordinate be [x,y,z]) in MRI scan using ITK snap, I get a particular inte…
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**Submitting authors:** Tiffany Timbers
**Repository:** https://github.com/ttimbers/breast_cancer_predictor
**Report link:** https://github.com/ttimbers/breast_cancer_predictor/blob/master/doc/brea…
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Thanks a lot
I am trying to run `mutect2` in **tumour-only** mode for which I need a panel of normal (PON)
I have tried **somatic-hg38_1000g_pon.hg38.vcf.vcf** which gives
`./gatk Mutect2 -R…
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### Client Version:
151.1642
### Issue Summary:
Pulsating tumors once you insert a legion core (any type), would probe the ghosts for a role to take up.
however, due to how ghost role selection ta…
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Hi Fabian,
After running HD-GLIO on data with paediatric patients with low grade gliomas, I get varying results. I know that the tool is tested on an adult population, but I wanted to know if it is…