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We've had MANIFEST files nearly since the inception of the Data Store (actually, the content was originally included in the README file in each collection, but we decided early-on to move the per-file…
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1.
In this context the string ["phone storage"](https://github.com/SimpleMobileTools/Simple-Contacts/blob/master/app/src/main/res/values-de/strings.xml#L9C46-L9C46) seems not suitable. Users think it…
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Hello, I wonder how do you create the vcf file?
1. For example, how do deepvariant produce the value of QUAL of each variant?
2. I see you use p_error while calculating the GQ? What's the p_error…
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Good morning,
Our team is currently working to add Pelops to our bioinformatics pipeline. Specifically, we would like to use it within an internally developed tool that currently accepts VCFs and a…
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Hi, thankyou for the amazing set of tools!
I am calling structural variations using GRIDSS, for that I first used SvPrep, then GRIDSS followed by GRIPSS. Then later, I used files generated by GRIPS…
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I just tried running the Linux binary of Kindred from https://www.haplotype.org/software.html. It processes a few loci, then segfaults. Nothing is written to the log file.
```
$ ls
kind…
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Hello, I am trying to use seqVCF2GDS to change vcf to GDS files, and am getting the following error:
Error in seqVCF2GDS(vcf.fn, "chr1.gds", storage.option = "LZMA_RA", parallel = FALSE) :
std::ba…
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Hi,
I'm trying to run GraffiTE in the mode that bypasses the SV calling steps but it seems to get stuck at the tsd_prep step. I was wondering if you had any idea why?
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Unfortunately a new error has come up. It seems similar to previous one with tb-profiler error
[tbprofiler.errlog.txt](https://github.com/user-attachments/files/16063200/tbprofiler.errlog.txt). Again…
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Hi @freeseek ,
What does 0 and 1 represent for ALLELE_A and ALLELE_B in the VCF INFO?
It seems like the Picard tools GtcToVcf implementation write alleles themselves in the Allele A and Alllele…