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I have tired running a few data sets through were we have XY linkage groups represented well in the contigs but they fail to scaffold with YAHS - The autosomes look nice but the sex chromosomes do not…
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Good morning
I have been trouble shooting this for a day to no avail, and as such am posting this question/query about my error message.
Command
```
ragtag.py merge ../../hifi_assemblay/all…
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After using YAHS to scaffold the total assembly size (1915795212 bp) is a lot smaller than that of the original hifiasm assembly (3196025640 bp) and has much worse BUSCO scores (70.2% VS 92.5%).
T…
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Hi,
How you ever seen a hic heatmap like this one? Are there serious problem in contig or hic data?
Waiting for your suggestions, thank you very much.
Best,
Kun
 to assemble a plant genome (2n=28) with HiFi and Hi-C data.
First, assuming it’s a diploid plant, so I run with command: `hifiasm -o OS010681.a…
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**Describe the bug**
When you begin to move around a chr or a scafold, you have a blank region that appear in the map. When you pass the cursor in it there is 0 observed value. It does not work with …
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Hello,
I am trying to install yahs and it throws the following error. Can you please check?
Thanks
```
In file included from sdict.c:38:
sdict.c: In function ‘ks_seek’:
kseq.h:42:17: warning: no…
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Hi,
Thanks for developing such wonderful tools.
I am working on birds with many, many micro-chromosomes.
I have some questions. I am looking forward to hearing from you.
For the input contig…
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hi Juicerbox team,
i am trying to use juicer pre for juicerbox files.
i am facing this error.
please anybody can guide me. Thanks
WARNING: sun.reflect.Reflection.getCallerClass is not supported.…
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```
[04:46:22 - AnntateAln] Found 427679179 monomers in 28247142 concatemers.
Segmentation fault (core dumped)
srun: error: HOSTNAME: task 0: Exited with exit code 139
```
ahcm updated
9 months ago