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I have tired running a few data sets through were we have XY linkage groups represented well in the contigs but they fail to scaffold with YAHS - The autosomes look nice but the sex chromosomes do not…
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"Thank you for your excellent work on genome scaffolding. I would like to seek your help to further improve the scaffolding for our genome.
We are studying a diploid plant species with an expected …
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Hello,
I am trying to install yahs and it throws the following error. Can you please check?
Thanks
```
In file included from sdict.c:38:
sdict.c: In function ‘ks_seek’:
kseq.h:42:17: warning: no…
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Hi there,
I am using GenomeScope2 to check the heterozygosity rate of a plant genome (2n=28) with HiFi reads.
The initial assembly with Hifiasm was used for running a mummerplot with A. thalian…
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Hello sir,
Long time fan and user of Flye, Abruijn, etc.
I have three datasets:
- PacBio HiFi
- 90-95% accurate ultra-long ONT
- Hi-C
I know there are other assemblers that may out-perform…
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hi Juicerbox team,
i am trying to use juicer pre for juicerbox files.
i am facing this error.
please anybody can guide me. Thanks
WARNING: sun.reflect.Reflection.getCallerClass is not supported.…
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**Describe the bug**
When you begin to move around a chr or a scafold, you have a blank region that appear in the map. When you pass the cursor in it there is 0 observed value. It does not work with …
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```
[04:46:22 - AnntateAln] Found 427679179 monomers in 28247142 concatemers.
Segmentation fault (core dumped)
srun: error: HOSTNAME: task 0: Exited with exit code 139
```
ahcm updated
9 months ago
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Hi there
Is it possible to implement support for BED files along with BAM and PAIR formats?
Best regards
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Since I am using haplotype resolved contigs, some of which may be highly similar, how can I show the missing signal in such regions as well?
When I set mapq to "-q 0" like I did with 3DNA, it doesn…