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Harbin is a large (11 M+) agglomeration in north-east China, on lockdown since mid april due to re-emergence of Covd19.
Harbin hosts the second chinese P4 laboratory at the Harbin Veterinary Research…
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Hi,
If we concatenate several anndata objects with exactly the same adata.var columns, it'll treat the same columns from different adata objects as different columns, and give -0, -1, -2... suffix t…
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I am trying to compute RNA velocity for mouse single-cell data. I am able to compute the velocities but when I run the scv.tl.velocity_graph(adata) command I get this error: --------------------------…
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Hello,
What is the optimal way to set k.filter for FindIntegrationAnchors if there are less than 200 cells? Should this parameter be set as high as possible or at a fraction of total cells? The …
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Hello,
I can use default Louvain algorithm to get right numbers of clusters, but it failed when I tried Leiden algorithm. Though I adjusted the resolution to a larger value, it still only produced …
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Thank you very much for publishing your code!
1) I wanted to ask if there is any significance to the fact that in the community_ecg() method, the forcing of the weights that are outside the 2-core,…
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Hello,
Trying to use sc.tl.umap with initial positions from sc.tl.paga. Seems an error with UMAP from the error log. But it is only called when calling paga positions, UMAP works otherwise.
I do…
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**Describe the bug**
I got `cudf.read_csv` failures when trying to use UVM as shown below. Some inputs do not trigger this issue.
**Steps/Code to reproduce bug**
CSV file : https://drive.google.…
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Hi,
Here's 10X data from [10k PBMCs from a healthy donor](https://support.10xgenomics.com/single-cell-gene-expression/datasets/3.0.0/pbmc_10k_protein_v3?).
I processed the data as usual..... I r…
arkal updated
4 years ago
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When I compare the values returned by the `quality()` method of `RBConfigurationVertexPartition` in louvain and leiden packages, I see that the values outputted by louvain is always a lot higher.
…