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When you load a segmentation into the Browser, previously you could uncheck the box next to the name (see pic attached) in the main window, and the labeling would not be displayed. Now it still works …
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We'll soon have somewhat final (in the sense of being the last iteration of the automated segmentation) segmentations for nuclei and cells.
However, we need to allow for changes in this segmentation …
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Is it possible to create ImageStack from IntensityTable and SegmentationMaskCollection?
I was wondering if it is possible to use starfish.ImageStack.from_numpy.
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@constantinpape
Could you guys clean up a bit?
:-)
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Hi
Thanks again again for the awesome code.
I have now switched to a working Ubuntu machine. However, I still have problems running your code.
As I am a bit new to the model tensorpack I will ap…
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I'm not sure if this is a question better posed here or on image.sc so please just let me know if I should post it there instead.
So I have 3 color ISH tissue images with cells labeled (fairly bri…
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Hi there!
I'm trying to get my head around the functionalities of QuPath in terms of automatic object detection (or segmentation). I'm currently working on a project that comprises the detection of…
cklat updated
5 years ago
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In my past life as a cell biologist, I used Imagej/FIJI to manually label regions of interest (ROI) in microscope images. After loading them in the RoiManager, ROI would be processed/analyzed with Ima…
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I just want to know did you run the 'deform_conv' part successfully? how can i get off keras,and embedding the deform_conv layer in the resnet101?
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> We can extend `TrainValidDataset` to support the full `torch.utils.data.Dataset` interface:
>
> ```python
> class TrainValidDataset(torch.utils.data.Dataset):
> def __init__(self, train_ds,…