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Hi:
I'm always struggling to find a less subjective way to do cell filtering? Say, if i have 14 samples in an experiment, can I set sample-specific thresholds for quality metrics like nFeature_RNA,…
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Hello everybody. First of all thank you very much for this repo. I am new on github, I don't know is this right place to share this, if it is not; please inform me and accept my apologises.
I wan…
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Hi,
The error as follows:
`
>devtools::install_github('satijalab/seurat-wrappers')
Installing package into ‘/R/x86_64-pc-linux-gnu-library/3.6’
(as ‘lib’ is unspecified)
* installing *source* …
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[//]: # "This issue description supports Markdown syntax (this is what comments look like). There's a cheatsheet here: https://guides.github.com/features/mastering-markdown/"
[//]: # "You can leave t…
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When trying to install liger, there is a missing dependency RANN.L1
On its CRAN page:
> Package ‘RANN.L1’ was removed from the CRAN repository.
>
> Formerly available versions can be obtained f…
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Error in (function (classes, fdef, mtable) : unable to find an inherited method for function ‘normalize’ for signature ‘"liger"’
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Dear all,
'd appreciate also having your suggestions on the following case of scRNAseq analysis with Seurat 3.1. ; the question is : what analysis strategy would you recommend (described below) ?
…
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The bottleneck is the data import. There might be a simple solution to this
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Dear all,
I have a question,is this integration method suitable for data from different species on different platforms?
Because my data comes from different species, one is a mouse(10X) and one is a…