-
@danpovey just reminded me that there is a memory issue we haven't handled yet. That is for now, we are saving processed dataset to one file on disk (e.g. train.pth.tar) and before that we need to loa…
-
Dear all,
Many thanks for providing such a great tool for free!
Is it possible for each identified/detected object from an original input image to save all objects as sub-images via individual im…
-
Hi,
I signed up to your site and wanted to download databases from Digital Pathology -- Segmentation of Nuclei in Images competition (http://miccai.cloudapp.net/competitions/57), but download links …
ghost updated
6 years ago
-
The nuclei viewer seems to actually be segmenting synapses instead of nuclei, or it is at least behaving differently to what usually occurs in the linux room. As you can see in this image of a single …
-
1. In the paper you mentioned the model can generate both image and text attention, with or without text input. So if input is only image **without text,** did you mean you can generate text report **…
-
Current docker image includes nuclei segmentation method only, so we need to upgrade the docker image with two methods (region based and cell based characterized by autoencoder).
-
Whenever I try to assign a file with the "nuclei" segmentation flag, it does not show up on the launcher listing for any classifier user that I've tested it with (including myself, yda, and bsh). Thes…
-
Viewer2D tasks boiled out of original issue:
- [x] Show total number of slices in heads-up display along with slice position
- [x] Drop the "non-synapse" classification state and just toggle betwe…
-
When building a pipeline on Chimp (user: rdegro, experiment: NUP_FollowUp1_20x) the Nulcei are undersegmented. This is caused by the separate_clumps module.
Nuclei segmentation including separate_cl…
-
This issue involves using `histomicstk.segmentation.label.trace_object_boundaries` in NucleiDetection CLI to generate nuclei annotations in the form of nuclear boundary polygons.
Maybe there could …