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## Description of the issue
The function _"recount::getTPM(rse)"_ returns the unexpected error message: _'Error: subscript contains invalid names'_.
Below, is a reproducible example that I have…
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Hi, I am using Seurat version '4.3.0' and SeuratObject '5.0.1' to run Pando, but I get an error when I run find_motifs:
```
Error in validObject(.Object) :
invalid class "SeuratPlus" object: i…
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This is not so much an issue as it is a question, or perhaps even a feature request.
While working on different projects I often need to keep different versions of R and packages. Say R 4.2 with `{…
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I run the tutorial dataset and I want to only calculate certain cell type interactions. For example:
sender = c(1,2,3,4)
receiver = c(5,6,8)
cellchat
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Hi,
Thanks for `muscat`.
Sorry for bringing this silly error, I don't think most people have it. But, I recently noticed my environment does not work well with equal named functions.
I got an err…
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Currently it only says "Observation weights. Not more than one numeric column may have this role." in the Task documentation.
Also, I got the reasonable question whether these are also applied durin…
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I've attempted to assess the effects of tweaking parameters and genes selected in velocyto.R, and for my particular dataset, it seems that in the ballpark of the thresholds used for filter.genes.by.cl…
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Can anyone help me with providing an example of using ggplot in a templaet for pdf export?
when using
``` R
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Hi,
I used this tool in the past in an older version of R and Python (3.6.2 and 3.6.3 respectively), and it worked like a charm, and thanks for your input to my imbalanced marker set question.
Given…
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### Actual Behavior
I'm trying to build a docker image with R installed in it. if I install R by saying
"conda install r" it sets TAR to /bin/gtar. This prevents some underlying R packages fr…