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Hi,
i estimate the genome using HiFi reads and the obtain high heterozygous (7%). However, i can not infer the two obviously peaks.
![linear_plot](https://github.com/schatzlab/genomescope/ass…
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Hello,
I am have annotated 40 genomes using Funannotate and would like to use Funannotate Compare for some staring analysis.
My code:
funannotate compare -i name_of_file.gbk, name_of_other_fi…
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Hello,
I I am running the pre-ma.bf script like so:
hyphy hyphy-analyses/codon-msa/pre-msa.bf --input combined_seq.fasta
I am running on a large memory node (1.5 Tb Memory) and get the followin…
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A user commented on a long run time for BreaKmer, below is the correspondence:
The algorithm has been running for more than 48 hours and have still not finished processing the data. So, I was wonderi…
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Hi Wei,
I am trying to use GATE to run genome-wide survival analysis and ran into errors with NA values generated for the fixed-effect coefficients after one or several iterations in step1.
The…
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Hi,
Thank you for the fantastic work. However i feel confused about some details:
1. I check the **TableS2**, the sums of each sample are different, like this:
![image](https://github.com/yge15/…
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Hi all,
Is it possible to dustmask sequences before building the database as it is advised by Kraken developers?
Is it also possible to specify to download references genomes at any assembly level a…
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Dear WebGestaltR authors,
I noticed that when I run the same analysis with the online app and the R package, I don't get the same "job summary" output, for the "entrez ID to functional categories"…
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I have 20 de novo hybrid genome assemblies (ONT plus Illumina; flye plus pylon polishing) of different strains of the same species.
For an initial genome reference, we also have a high quality (T2T,…
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## Good news
- The fixed-topology network is done. I will play with some other environments and see how the fixed neuroevolution performs. Will probably hardcode the neural-agent part for each env …