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Currently a matrix with tanimoto scores is generated. However, only the top 10 highest scoring Tanimoto scores are needed for MS2Query.
Suggested change:
Do not store the entire matrix with tanim…
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Hello,
We are using DiaNN on HPC for processing dia data. The CPU node on cluster contains 2 AMD-7702 CPU with 128 cores in total. However, we found it quite slow (70 mins )comparing to run it on 2…
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Step 4.1
```
crabs insilico_pcr --input input.fasta --output output.fasta --fwd AGTC --rev ACTG --error 4.5
```
Suppose the length of expected amplicon is 100bp, and there is a long template (e.…
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Hi, Do you have a recommendation for a mouse restriction enzyme?
HpyCH4V generates an ok size range, but it creates peaks. I'm guessing because of repetitive elements?
Thanks!
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Hi,
Wanted to quickly ask - is it possible to pass custom colors for my cell clusters (or some categorical variable) for the `oracle.plot_cluster_whole` function after in silico GRN perturbation?
…
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Reported error about a job that looks like it finished (from the logs) but failed.
Doesn't look like an input/param issue so far.
toolshed.g2.bx.psu.edu/repos/iuc/trinity/trinity/2.9.1+galaxy2
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Hi,
I'm very interested in Lisa for transcriptional factors prediction, and I installed Lisa successfully using conda. But when I run Lisa using `lisa model --clean=True --method="all" --web=True --n…
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**Submitting author:** @miguelfortuna (Miguel A. Fortuna)
**Repository:** https://gitlab.com/fortunalab/ontoavida
**Branch with paper.md** (empty if default branch): development
**Version:** v2022-03-…
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In this poster, we are trying to compare the traditional method (tradition) and the one we created (jlne) in schema matching
The function we need to implement for the poster
- [source schema trans…
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Hello,
First of thanks for providing such a nice tool for automatization of in in silico generation and analysis of site saturation mutagenesis libraries. It will prove very useful for my work!
…