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When trying to install p4 on other Linux distribution than Debian/Ubuntu I get following error after typing python setup.py build:
The setup.py script could not find the libgsl or gsl headers.
So th…
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Hi Guangchuan,
I am testing ggtree for tumor evolution. I am still learning phylogenetics. Forgive me if it sounds naive.
I have sequenced say 20 patients using whole exome and identified mutati…
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Put together lecture on forecasting. This extrapolates from previous lectures on serology, timeseries and phylogenetics. Include both epi and evolutionary components. We have this down for mostly Sara…
trvrb updated
8 years ago
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Dear All,
I am interested in identifying specific codons under selection from a dataset of 5 different genes, sampled from within the same species across a wide geographical area. The dataset consist…
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We've added so many new features since Bio.jl 0.3, so I believe it's time to release a new minor version for users. Hopefully, I'd like to do that on this weekend, but if you have anything that should…
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sublime Text 3 (Build 3126) + LaTeXTools + Texlive
According to [the answer to this problem](https://tex.stackexchange.com/questions/203369/citation-not-found-if-bib-file-in-parent-directory), I tr…
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I wanted to write some notes on this now while the course is still fresh. I'd propose the following:
I would take over the first lecture that would incorporate the more biological material from "comp…
trvrb updated
8 years ago
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![screenshot from 2016-08-12 12 02 43](https://cloud.githubusercontent.com/assets/808499/17628702/b6292f6a-6084-11e6-9ed6-fc3cddd223e1.png)
Can we change this to: "Data for this study _are_ archived.…
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I tried modifying the example in https://github.com/etetoolkit/ete/issues/219#issuecomment-221196256 as follows, but I was not able to make ete3 show the sequences corresponding to internal nodes.
Of…
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Hi all, great job with this module I a about to push on production for my lab.
I am experiencing a (little) issue regarding two directories used by saga, which want to be created in /var/www. (as I am…