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Hi Ben,
When running SingleM I sometimes receive the following error (full output below). Does this simply mean that none of the reads aligned to any of the ribosomal proteins (and so a subsequent …
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- Original ID: 3231
- Added by **Dimitrios Koureas**
- Scratchpads URL: null
### Description:
The group of the following members
DK, DR, LL, EB
have discussed and developed a module specificati…
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Hello!
So, I have encountered a problem that could be solved by swarm, however I am not sure. I currently have 20 sequenced samples. In every sample, I have the sequence of two different genes (msp1 …
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I'm running GTDB-Tk v0.3.0 (downloaded from conda) with data release 89. I've run the test, which completes without error.
I'm now trying to run to program on 250 genomes using 16 threads, but get …
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Hello,
I tested my GTDBTk installation by running "gtdbtk test --out_dir test1", and I ran into the error "FastANI has stopped:
ERROR, skch::validateInputFiles, Could not open /sdc/Project/tengwk/…
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Hi,
How can I use kaiju to do the taxonomic assignment of my contigs/bins ? Are there special options for that ?
Thank you very much
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**[Original report](https://bitbucket.org/biobakery/metaphlan2/issue/37) by Justin Shaffer (Bitbucket: [Justin Shaffer](https://bitbucket.org/Justin Shaffer), ).**
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I get the following output when running against a collection of bins. Any thoughts as to what it might be?
[2019-02-12 17:29:49] INFO: GTDB-Tk v0.1.6
[2019-02-12 17:29:49] INFO: gtdbtk classify_wf…
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Hi everyone!
Recently I was working on a huge amount of 16S amplicon data from various environments. It is not a surprise that in some (most of...) samples the **unclassified** taxa (at least at genu…