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Using this command
docker run -i --rm -v /Users/andek/Research_projects/BIDSSPM/test/ds003:/bids_dataset -v /Users/andek/Research_projects/BIDSSPM/test/results:/outputs bids/spm /bids_dataset /outp…
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When running group-level analysis, after having ran participant level analyses independently, the derivatives directory used to search for json iqm files is the bids_dir rather than the out/derivative…
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To improve user experience the `broccolipipeline.sh` script should check if `bids-validator` is available and call it (`bids-validator $bids_dir`) to check input data compatibility before running any …
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Hi @chrisfilo.
The [build](https://circleci.com/gh/BIDS-Apps/tracula/11?utm_campaign=vcs-integration-link&utm_medium=referral&utm_source=github-build-link) [fails](https://circleci.com/api/v1.1/proje…
fliem updated
7 years ago
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How about renaming group -> group1, and adding group-level stats tables (aparcstats2table, asegstats2table) as group2? I could work on that.
fliem updated
7 years ago
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The json_to_csv module does not seem to be working?
170116-22:03:59,635 workflow INFO:
Writing PDF reports
Traceback (most recent call last):
File "/code/run.py", line 132, in
obj.run(…
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if there are multiple T2 or FLAIR images in the directory structure, the T2pial or FLAIRpial stages do not seem to be run.
Additionally, if multiple T1s are provided, but of different resolution, f…
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Add a `DataSink` to write the pdf in the `-o out/` folder.
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Reading WashU's [HCP Pipelines documentation](https://github.com/Washington-University/Pipelines/wiki/v3.4.0-Release-Notes%2C-Installation%2C-and-Usage#prerequisites), FSL 5.0.6 is recommended, as 5.0…