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Hi
1) I am having trouble with getting PGAP running.
Firstly, I did the installation of docker desktop.
https://docs.docker.com/desktop/install/ubuntu/
Docker is located in the following di…
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Dear developer,
Thank you for making avaible this pipeline publicly.
Why this warning? Does this mean the tool cannot detect the tRNA sequence region when it is present?
Below the output on my …
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Hi,
I am trying to load my own VCF using loadVCFs:
CNV.GR
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Hi
I downloaded the tool and installed it following your instructions, including MEME, which is installed in my home directory. I get the following error when CUT-RUN-Tools runs MEME:
[](url)I get a…
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https://mp.weixin.qq.com/s/xqO7Wur2cMLLwRUSgR1yuQ
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I am using R-hub builder and there is a problem with GenomeInfoDb on Windows:
```
Error: package 'GenomeInfoDb' required by 'GenomicRanges' could not be found
```
Bioconductor also reports an …
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**Description**
**Sub-lineage of:** BA.5.2.16
**Earliest sequence:** 2022-8-21, USA, Wisconsin — EPI_ISL_14849494
**Most recent sequence:** 2022-8-31, USA, California — EPI_ISL_14941093
**Countrie…
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### Background
We were trying to process a VCF with htsjdk from here: http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/1000G_2504_high_coverage/working/20220422_3202_phased_SNV_INDEL_SV…
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**Describe the bug**
A clear and concise description of what the bug is.
`gimme motif` fails and does not produce any motifs
I have run `gimme motif` in multiple different environments and i…
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Hello,
I ran the reference-only mode following the basic instructions. The reference is a well-assembled genome (a mammal, PacBio HiFI, N50 of 23Mbp, total length 2.3gbp).
java -Xmx88g -Xms4g Lo…