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I ran the code below and I quickly received error:
```
/home/hpc/crlee/HiC/3d-dna-master/run-asm-pipeline.sh /home/hpc/crlee/HungWei/Hi-C/aligned/merged_nodups.txt /home/hpc/crlee/HungWei/Hi-C/refer…
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Dear liger team,
I noticed by default the plotGene() function returns graphs colored with "plasma", but the scales for each plot, and in the same set of plots between original datasets are variable…
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Hello, I am trying to use liger to analyze 10X data, and I followed the walkthrough_pbmc documentation, but in the step of determining the k value, you suggest using the suggestK function to find the …
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I am using the Liger docker on a cluster node, and whenever I try to use the function GetAssayData on a Liger or Seurat object (or any function that utilizes GetAssayData such as seuratToLiger) I get …
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this cat will look like a hyena
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**Ampersands in query params within src/href attributes are being escaped**
Currently, all attributes are sanitized for the browser using [`escapeTextContentForBrowser`](https://github.com/facebook/r…
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Can I use Liger to analyze scHi-C data?
best,
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Hello,
I was following the Seurat wrapper vignette for my data, but when I was running RunOptimizeALS I got this error:
```Error: 'optimizeALS' is not an exported object from 'namespace:liger```…
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Hello,
Using LIGER, I found some factors contributed by cycle cycle related genes and treatment, and I would like to regress out these unwanted factors. Does LIGER provide any functions to do that?
…