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**Problem description**
I have successfully run MATAM on two of my metagenomic datasets with the `--perform_taxonomic_assignment` flag. However, I receive the following error during taxonomic assig…
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As noted [here](https://github.com/qiime2/q2-dada2/issues/80#issuecomment-360342751), when that new release lands, we should update the pinned version here, as well as revert the SSE changes made in J…
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I'm doing some benchmark comparisons to other pipelines. For this, I need to be able to output the following for each read:
- read passes quality filtering
- read is chimeric
- read is overlappi…
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Are there any recommended minimal system requirements to run this program? I want to install it on my machine (8gb RAM, 2.6GHz i5) but am afraid it will crash. Feedback would be appreciated.
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When running the taxonomy.sh (after making changes to get it fully running), I found that the `mmseqs convertkb` generates millions "Could not find accession" warnings. Should this be expected? I'm gu…
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Hello,
I am doing a plant metabarcoding project, and I am interested in using the assignTaxonomy function to assign taxa from a personal plant reference database to sequences ranging from 10 to 15…
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Hello. I used DADA2 to analyse several samples from different runs. The reads are 274 pb long and came from a region V1, V2, V3 480 pb long of ribosomal bacteria rna .
Then I continue working with …
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I just updated the database to release 86 and the software to v0.1.6. I am now getting the following error;
previous steps ran to completion without error:
```
[2019-01-19 11:02:11] INFO: GTDB-…
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HI, I have followed the update documentation but I am having trouble running CAMISAM.
Running the docker command says the mini.biom file is not available. I try entering the docker container using…
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Hi Lucas and thanks again for this quickly-evolving tool.
I'd like to use the `assign` subcommand, in order to give the label of the branch on which a query is best placed. For this I guessed that …