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Dear Dr Daducci,
I am applying COMMIT2 to my research. When my tractogram contains 1 million streamlines and my parcellation of the Gray Matter contains over 100 ROIs, I can't get a file like demo01…
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### Expected situation
There's two parcels missing in fsLR template. And I've understood this is related to the difference between middlewall in fsaverage and fsLR. I thougt the missing parcels may h…
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Hi @raamana,
I was testing the outlier detection module in VisualQC (latest version) and I see the same error as above. Please can assist in how to resolve this error:
$ visualqc_freesurfer --fs…
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### Issue summary
When trying to generate spatial null maps for volumetric data (voxel-wise and parcellated), I encountered three different error messages in the process.
### Detailed issue descript…
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Brainstorming on how to make CMP3 handling custom cortical parcellation atlases.
*Possible inputs*
* Custom BIDS derivative directory with parcellation in native space - (*_atlas-_dseg.nii.gz and…
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Hello,
I’m trying to add the Schaefer_2018 atlas into FSL, following the instructions in the README file, it seems that the lut file format is not supported with fsleyes (and that the old fslview …
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**First thoughts**
* Design/first sketch of the new EEG pipeline
* Function to load Cartool / EEGlab / Fieldtrip inverse solutions as input
* Implement the interface to compute single source dipol…
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also GM volume outputs are in different order than matrix / parcellation look-up table
relevant code here: https://github.com/McIntosh-Lab-RRI/tvb-ukbb/blob/3cebec9f0d26ddfb75b82ea7b5ae678a770eb505…
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The controversy as I see it is balancing the philosophical choices of the maintainers versus how the code has actually been behaving over the last near decade (and how many people depend on that behav…
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**Description**
I want to use the AAL3 template. when i add it by myself, I face the following problem.
211111-11:19:15,11 nipype.workflow ERROR:
could not run node: t1-volume-parcellation.atlas_…