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Process 'MSFragger' finished, exit code: 1
Process returned non-zero exit code, stopping
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Cancelling 31 remaining tasks
08:43:59 ERROR: Error writing log to file
java.nio.chan…
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Dear Felix,
I hope you are doing fine. I am currently having an issue with certain libraries when running the bismark2bedGraph function. This is the command I have used:
`~/programs/bismark/Bism…
mo716 updated
3 years ago
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Hello MSFragger team,
I try to use MSFragger (through FragPipe) to search phosphorylation data from Bruker’s TimsTOF pro. However, all intensity values for proteins and peptides are 0 in the search…
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Hi
I have got an error message while I was trying to find the interactions within a complexe made of 3 chains in the command line with the following parameters:
'[1KXV_1.clean.pdb', '-s', '/A/2/',…
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Hello,
Is there any way to get only 1 graph for all the protein chains in a single pdb file. I tried the follow wing command `java -jar plcc.jar 4u0g --aa-graphs-pdb` but it still outputs a large n…
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Mockup and rough R code are attached. Key features:
- "binning" of peptides into predefined categories/tiers
- revision that exposes more data in a more interpretable manner
As discussed, step 1…
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#### General information
* **App version: 2.5.0 Google Play**
* **System: 6.0.1, Samsung J2 Prime (SM-G532G/DS)**
#### Description
Content deformed while editing file in SDCard. (Editing f…
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Hi,
I am trying to test msfragger open searches within philosopher in Fragpipe but am getting the following error:
(I'm new to github and posting stuff, still hope you find all the info you need to …
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Hi,
I copy and pasted the installation instructions from the README and am running the the script in the active EDTA environment. It seems that the EDTA.pl script chokes trying to use TIR-Learner. …
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https://github.com/pombase/canto/issues/2098
I'm assuming the DB namespace and assigned_by are fixed.
The file seems fine to me. At some point fairly soon we will need to generate GPAD for subm…