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Hi Daniel,
i am using Fusioncatcher, 0.99.4b version i could run fine on the test samples with the same build Ensembl 79 vesion. but when i ran with my RNA-seqdata, half way it threw Error saying cou…
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50791A-RT3-only-pos084-V3LOOP-2_S86 in run 130916.
Here's the stack trace:
```
Traceback (most recent call last):
File "/opt/eclipse44/plugins/org.python.pydev_3.6.0.201406232321/pysrc/pydevd.py", …
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This applies specifically to the HLA-B exon sequences
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Because we have no HLA-A, -B, or -C references in csf2counts
This is tricky because there is no meaningful reading frame - the region being sequenced comprises two exons separated by an intron.
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This task is to check out the shipyard branch of the MiSeq pipeline project, set up all the configuration, and run the pipeline on a developer workstation for an example FASTQ file.