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The nuclei viewer seems to actually be segmenting synapses instead of nuclei, or it is at least behaving differently to what usually occurs in the linux room. As you can see in this image of a single …
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1. In the paper you mentioned the model can generate both image and text attention, with or without text input. So if input is only image **without text,** did you mean you can generate text report **…
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Current docker image includes nuclei segmentation method only, so we need to upgrade the docker image with two methods (region based and cell based characterized by autoencoder).
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Whenever I try to assign a file with the "nuclei" segmentation flag, it does not show up on the launcher listing for any classifier user that I've tested it with (including myself, yda, and bsh). Thes…
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When building a pipeline on Chimp (user: rdegro, experiment: NUP_FollowUp1_20x) the Nulcei are undersegmented. This is caused by the separate_clumps module.
Nuclei segmentation including separate_cl…
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Viewer2D tasks boiled out of original issue:
- [x] Show total number of slices in heads-up display along with slice position
- [x] Drop the "non-synapse" classification state and just toggle betwe…
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This issue involves using `histomicstk.segmentation.label.trace_object_boundaries` in NucleiDetection CLI to generate nuclei annotations in the form of nuclear boundary polygons.
Maybe there could …
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Hi Dave,
sorry I run into trouble again. i switched to using old version of keras (1.2)
I can run the running_template for theriot and give good results.
However when i'm trying to modify for it t…
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There are situations when objects identified in separate channels or using different thresholds could be usefully combined into a single set of objects. For example, several cell types in a highly mul…
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Hi, happy to discuss these if they don't make sense! Thank you.
**High priority items**:
- ~~New dashboard link: Need a way to see which segmentation results were submitted as "complete" from segmen…