-
I am encountering an issue with the reconstruction of plasmid sequences using mob_recon. While all other files are successfully generated, the actual sequences remain absent. The recurring warning mes…
-
I apologize if this is obvious, but I haven't been able to figure it out: how do I create an MPRASet if the number of DNA replicates is not equal to the number of RNA replicates? In all the examples, …
-
There are two common ways to sequence a DNA: short-read and long-read sequencing. As of right now, YEAT only supports short-read sequencing. Adding long-read assembly support will be a tremendous addi…
-
Following discussion already have in post #2, I did some tests on two of our samples. However, I observe different results among them. Note that for the simplicity,
- the base calling is done wit…
-
**Please confirm that you've checked the FAQ section:**
https://github.com/jolespin/veba/blob/main/FAQ.md
If you still have a question, feel free to ask here.
I can't run docker on the cluster.…
-
[Fabric loader 0.15.0](https://github.com/FabricMC/fabric-loader/releases/tag/0.15.0) includes MixinExtras, so when updating the loader version, the separate dependency and repository declarations for…
-
There are a number of presets that look totally broken or potentially seizure inducing. Lets try to get the worst ones out.
TODO:
- Browse through all prests
- "Dislike" bad ones
- Check in as…
-
The configuration for the `koth:romantica` game contains a trailing comma:
https://github.com/NucleoidMC/koth/blob/0b36d9b0af607cec4616e9d0468e51ffda802827/src/main/resources/data/koth/games/romant…
-
Hello,
First, thanks for developing GeNomad, it ran smoothly in my metagenomic dataset from lakes.
After I ran genomad I got the contig summary mentioning `"15,657 plasmid(s) and 6,922 virus(es…
-
If someone manually sequences with a Sanger primer not listed in the Registry options, should probably flag it (but not forbid using it).