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I was wondering, in the cpg0016-jump dataset, where can I locate the image data associated with each of the five
channels and six fluorescent dyes described in the [Chandrasekaran et al. 2023 preprin…
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Seurat and SeuratObject 5.0.1 installed from CRAN.
Attempting to merge SeuratObjects with "collapse=TRUE" results in error "Collapsing layers is not yet supported". I can see also in the current GitH…
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Some of the fast5's of the RNA reads do not seem to be readable. I downloaded the reads of the 5 Bham runs (using wget, I don't know if that matters?). My python scripts (using h5py library) return "O…
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One of the planned analyses is to benchmark (or, provide prior expectations for) the immune composition of known cell types.
For example, what is typical TIL proportion & composition in a sample of …
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I have tested three models, ade20k_rna-a1_cls150_s8_ep-0001, voc_rna-a1_cls21_s8_coco_ep-0001, and voc_rna-a1_cls21_s8_ep-0001. All of them produced very very low mean ious. Please let me know the ver…
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Hi,
10x has a newish product ["flex"](https://www.10xgenomics.com/products/single-cell-gene-expression-flex) that allows for the sequencing of fixed nuclei.
It works based on [a set of 20 000 pr…
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Based on introduction, I updated the flow_cells.toml and copied the sequencing_MIN106_RNA_short.toml to /opt/ont/minknow/conf/package. However, my MinKNOW didn't recognize the sequencing_MIN106_RNA_sh…
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The September 2024 GO Release ([2024-09-08/](http://release.geneontology.org/2024-09-08/index.html)) is now available.
http://current.geneontology.org/
http://release.geneontology.org/2024-09-08
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Hi,
Thanks for the nice work and code!! For the datasets (S6-S17) jhpce#HumanPilot10x, how could I get the RNA velocity? I'm trying to use the velocyto package to generate .loom file. I'm wonderin…