-
As of late this week, Pandas import has started to fail on MacOS. Needs investigation.
See, [for example](https://github.com/chanzuckerberg/cellxgene-census/actions/runs/5295232695/jobs/9587053994…
-
The children of [L2/3-6 intratelencephalic projecting glutamatergic cortical neuron](https://www.ebi.ac.uk/ols/ontologies/cl/terms?iri=http%3A%2F%2Fpurl.obolibrary.org%2Fobo%2FCL_4023040) have the tex…
-
Hi there, I'm trying to use the data loader to access cellxgene collections (following [the tutorial](https://github.com/theislab/sfaira_tutorials/blob/master/tutorials/cellxgene_download.ipynb)). I'v…
-
Reported by @jahilton
• 16 collections currently contain some unknown
• 6 of those are all unknown
To improve data quality, `cellxgene-schema` must warn when:
1. The value of `development_st…
-
## Motivation
The package is currently really hard to install in environments with other packages. The pins are too strict and use old versions that are no longer supported.
See:
https://github…
-
@Yanay1 commented on [Wed May 10 2023](https://github.com/chanzuckerberg/cellxgene-census/issues/469)
## Description
There are a few datasets that have multiple organisms in them, and this may inc…
-
Running the latest acceptance tests generates a SEGV when calling skmisc.loess.loess.fit().
```
$ pytest -v --durations=0 --durations-min=1.0 --expensive --experimental ./api/python/cellxgene_cens…
-
Add support for type checking code that _uses_ the cellxgene-census python package.
Currently, running mypy on code that _uses_ the cellxgene-census package receives an error from mypy:
> Skipping…
-
We need to investigate what Ensembl IDs should be updated from the current schema version (GENCODE v38) to a new Ensembl ID reflected in the next pinned annotation version in the schema (most recent i…
-
# Design
**Note: I'm preferring a _hand-wavy_ "metadata fields" rather than getting into details of keys or column names depending on the Anndata section in question. And obviously, some Anndata se…