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A user requested:
```
Fix atom names in Het Groups - ie where all carbons are called 'C',
they should be renamed 'C1', 'C2', etc, and the same for other elements.
```
Developers, do you feel …
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## Expected Behavior
hhblits3 (commit d7559702fcf8f58989b12376b87e415f79ca0d9b) should give better MSA than hhblits2 (2.0.15, patched with https://gist.github.com/milot-mirdita/fd4b193a2423cc8e71868a…
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I'm trying to run the package on quite an unusual molecule and I thought that my .itp file was correct, however, I am starting to doubt this.
When I run:
```
mdpow-equilibrium --solvent water runin…
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```
(Collect change requests for the CV here.)
[Term]
id: PI:00216
name: sequest:PeptideRank
def: "The SEQUEST result 'Rank' in out file (peptide)." [ref:ref]
is_a: PI:00153 ! search engine specific …
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#### Which modpack version are you using?
2.0.4.9
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#### If in multiplayer; On which server does this happen?
SP and private MP
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#### What did you try to do, and what did you expect to happen?…
DV666 updated
4 years ago
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## Expected Behavior
MMSeqs search followed by MMSeqs convertalis --format-output "query,target,pident,nident" should export the number of identical matches between query and target sequences
## C…
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Hi,
I have so far had limited but very positive experience with MSFragger, and am planning to increasingly use it in future. Its speed and sensitivity are just phenomenal, so thanks for doing some am…
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First of all, big fan of your work, jax-unirep has really helped me a lot in embedding sequences and evotuning the original weights. I am currently interested in training the mLSTM1900 weights from sc…
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Dear all,
I am trying to analyze my N-terminome data using the open search option in FragPipe, to check if it is unpredicted modifications.
Usually, in this type of data, I consider the enzyme Ar…
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- Here is the URL for the updated National Piggery Residues data
- to replace the 2 layers under Renewables - Bioenergy - National with the one layer (below)
https://lsa.geohub.sa.gov.au/server/…