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### Description
While executing the `setupGaps.pl` script, I encountered several warnings about uninitialized values, as well as multiple notices of entries being skipped due to them being fragments …
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# 生信爱好者周刊（第 116 期）：
这里记录每周值得分享的生信相关内容，周日发布。
本杂志开源（GitHub: [openbiox/weekly](https://github.com/openbiox/weekly)），欢迎提交 issue，投稿或推荐生信相关内容。
[「生信周刊讨论区」](https://github.com/openbiox/weekly/discuss…
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Hi Lucas,
I'm trying to generate a sync filewith the following command:
grenedalf sync --threads 8 --sam-path /shared/projects/invalbo/tiphaine/results/04_Polishing/Reunion/O_rg_marked_realigned…
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# 生信爱好者周刊（第 118 期）：
这里记录每周值得分享的生信相关内容，周日发布。
本杂志开源（GitHub: [openbiox/weekly](https://github.com/openbiox/weekly)），欢迎提交 issue，投稿或推荐生信相关内容。
[「生信周刊讨论区」](https://github.com/openbiox/weekly/discuss…
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Hi Fmalmeida,
I am getting the following error as I try to resume my pipeline analysis.
`Pulling fmalmeida/bacannot ...
Remote origin did not advertise Ref for branch refs/heads/116-integron_finder…
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### Description of the bug
Hi,
I'm trying to run the pipeline with the -maxgquant option and encountering a problem in this step, which is running a shiniyngs script:
```
exploratory_plots.R \…
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Originally reported by: **Reece Hart (Bitbucket: [reece](http://bitbucket.org/reece), GitHub: [reece](http://github.com/reece))**
----------------------------------------
Finally close to being able…
reece updated
8 months ago
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## Description
We have an old deviation open (https://github.com/Clinical-Genomics/Deviations/issues/471) that was caused by some odd upload behavior of MUTANT results to the GISAID database.
T…
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Summary of request: Add a new organization to ROR
Name of organization: NERC Environmental Bioinformatics Centre
Website: http://bioinfo-core.org/index.php/NERC_Environmental_Bioinformatics_Centre…
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Can't locate Text/NSP/Measures/2D/Fisher/twotailed.pm in @INC (you may need to install the Text::NSP::Measures::2D::Fisher::twotailed module)
summary$ which perl
/cvmfs/soft.ccr.buffalo.edu/versi…