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From FULL force meeting: Medaka improves the assemblies
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jzook updated
2 months ago
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Afternoon,
I have completed several runs of Braker on a novel aphid genome with rna-seq reads.
After go-enrichment I found out only about tenth of the reads had a match to go terms for the neare…
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**Describe the bug:**
The activation command for `fish` fails for me because there is a `(...)` in the pathname, which `fish` tries to run as a command substitution since the command run by `flox a…
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Hi,
I'm very much interested in using the HumGut database, but I have a few questions about the taxonomy files.
1) I wanted to include the Kraken DB for viruses and fungi to explore these other…
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Hi!
I am using Hmmer3 with bivalve genomes looking for 70-80 aa genes. BUSCO scores for the genomes are in the upper 90s (96-98% complete for BUSCO Metazoa) and most assemblies are chromosome-scale…
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Hello,
The CRAFT software is a power tools for me.
However, I got the following error messages when I want to use fasta file from GENCODE, which is used to find my circRNA.
`Error: The genome file …
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I loaded all bacteriophage data, went to the genome tab, and then clicked on Synechococcus as host. It should have 97 total genomes at that point, but instead there are 157.
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**Background**:
[Genome Nexus](https://www.genomenexus.org/) [1] is a tool for the annotation and interpretation of mutations in cancer. [cBioPortal](https://cbioportal.org) leverages Genome Nexus' …
inodb updated
4 months ago
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Hi Dengjuan,
I am really interested in your paper "Single-cell transcriptome and metagenome profiling reveals the genetic basis of rumen functions and convergent developmental patterns in ruminants" …