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Hi Team,
I was thinking about how to call clusters across multiple samples and wanted to get your thoughts on using the ccube_sv_input file that is generated and converting it to a pyclone input. I…
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Hi dear people,
I have a few questions regarding the input file from STACKS. My data is from ddRAD, pair-end reads, aligned to a draft genome. I noticed that in the input file made by Stacks there…
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I've created this issue according to https://github.com/golang/proposal .
This is an issue to discuss a proposal to add goroutine names for **debugging** **purposes** **only**. The name will appear…
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Hello,
I have 2 questions -
1. My UMI barcodes are in this format - 'XXXXXXXXNNNNNNNNN'. So, when I use calib, my -l option for barcode tag length should be 8 or 17?
2. After running calib and g…
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I tried running the "Cluster" function, but got this. What is wrong here?
Clustering and calling consensus on 24 chunks (Thread Region RamUsed Time):
ERROR: could not extract a BMF barcode from th…
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Make sure that these boxes are checked before submitting your issue -- thank you!
- [x] This issue is for the Python interface of igraph.
- [x] This issue is a bug report or a feature request, not…
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I'm currently comparing sedimentation-based LOPIT and density-based LOPIT approaches and wanted some easy to understand visualisations that will help to see how the organelles/localisations separate d…
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Sometimes this happens:
```
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ipyrad [v.0.9.31]
Interactive assembly and analysis of RAD-seq data
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Thank you for creating a great tool!
I am currently running some closed _E. coli_ genomes through mob_recon. In the results, I noticed that one isolate had a closed plasmid sequence categorized as "…