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How can I cite the current specs?
For instance, SAM was defined in http://bioinformatics.oxfordjournals.org/cgi/doi/10.1093/bioinformatics/btp352, but the specifications have changed a lot since th…
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```
What steps will reproduce the problem?
1. interproscan.sh -dp -f TSV -goterms -iprlookup -pa -i test_proteins.fasta
-mode cluster -clusterrunid testIPR
What is the expected output? What do you …
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Salmonella enterica CP053576 might be the incorrect entry and I'll need to double check that. It might be the plasmid of subspecies IV and not the chromosome.
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```
What steps will reproduce the problem?
1. interproscan.sh -dp -f TSV -goterms -iprlookup -pa -i test_proteins.fasta
-mode cluster -clusterrunid testIPR
What is the expected output? What do you …
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Ticket to discuss use of "transformant" allele type.
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Would you be open to adding a replicon rotation feature similar to what unicycler does? There's an [existing issue](https://github.com/fenderglass/Flye/issues/315) on the flye repo that states that it…
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```
What steps will reproduce the problem?
1. interproscan.sh -dp -f TSV -goterms -iprlookup -pa -i test_proteins.fasta
-mode cluster -clusterrunid testIPR
What is the expected output? What do you …
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Some annotated product name seems inaccurate. For example, the protein annotation file is "hypothetical protein", but its RefSeq: WP_017098013.1 shows that it is "RepB family plasmid replication initi…
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Hi,
I have a problem with Tormes. When I work on fastq reads. When I start analysis all output files are moved by Tormes to rubbish and after in analysis I got a lot of information about "ERROR: coul…
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The colocalization_plot.svg seems to contain duplicates, defined as reads (rows) with a approximately the same length and the same ARGs/MGEs in the same locations within the reads. For an example, ple…