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Hello,
I'm newbie in metagenomic data analysis. I have used prokka to annoate my contigs and want to see the protein abundance (.faa) and functional distribution of the genes. which will be the best…
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Update the following URL to point to the GitHub repository of
the package you wish to submit to _Bioconductor_
- Repository: https://github.com/kkdey/Logolas
Confirm the following by editing ea…
kkdey updated
7 years ago
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Hi,
I am trying to run PAPRICA on a linux server.
I have installed all the dependencies, but when I try to run ```./paprica-run.sh test.bacteria bacteria``` I get the following error:
```
pplacer…
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### Background
The protein-protein interaction (PPI) is a physical contact between two proteins, or more, resulted from biochemical reaction or electrostatic forces. The interaction usually takes pla…
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MzTab, mzQuantML and mzIdentML need to store the original file name(s) of the experiment (usually the mzML). This information should be also preserved in idXML, featureXML, consensusXML.
This issue i…
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Hi,
I've installed MetAMOS and iMetAMOS on my linux box and tried to run the test pipleine (run_pipeline_test.sh) and got the following warnings and errors:
A few questions:
1) I HAVE definitely inst…
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term: bimolecular fluorescence complementation
shortlabel: bifc
description: A compelmentation technique for
visualization of protein–protein interactions. This
approach relies on the formation of a…
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Hello,
We are trying to follow the tutorial "ligand binding analysis" as a python script, but we can't use the methods that create plots (plotTrajSizes, plotTimescales, getRates): when we call them, …
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term: bimolecular fluorescence complementation
shortlabel: bifc
description: A compelmentation technique for
visualization of protein–protein interactions. This
approach relies on the formation of a…
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"Bioconductor (http://www.bioconductor.org/) is an open source, open development software project to provide tools for the analysis and comprehension of high-throughput genomic data. It is based prima…