-
RepeatMasker version 4.1.4
Dfam version 3.7
Error occurs whenever -species is set to a node near the base of the tree, i.e. 'cellular organism'
Example command -->
`RepeatMasker contig.fa -speci…
-
Using RepeatMasker with a library generated by RepeatModeler, PLEs are missing from final RepeatMasker quantifications. In the consensus library, RepeatClassifier classifies these elements as family#P…
-
Hi there,
I am currently analyzing some samples and came across this result from one of my analyses:
```
##RepeatRegion=chr11-639647-640306-CCCCGCGCCCGGCCTTCCCCGGGGTCCCTGCGGCCCCGACTGTGCGCC
#Re…
-
There may be a bug for the script solo_intact_ratio.pl.
The intact LTR count always less 1 than the real count.
I fixed it like:
#!/usr/bin/perl -w
use strict;
use 5.010;
#compute solo-intact …
-
区老师：
您好！
我在对一种非模式酵母进行重复序列的注释，我参考了https://github.com/oushujun/EDTA/issues/231 中的内容。希望将RepeatMasker4的预测结果整合进EDTA。我目前想到两种流程，不知哪一种更合适，希望区老师提出建议。
流程1：
使用RepeatMasker4中自带的脚本：
…
-
**What do you want to know?**
How to reproduce the hits from RepeatMasker (I used `-e ncbi` specifically) to debug why the output from BLASTN (default parameters) for a particular repeat sequence i…
-
reasonaTE requires python 2.7, whereas RM requires python 3. Is there a way to actually get reasonaTE to run RM? I couldn't figure out how they can live in the same conda env. This is also important s…
-
https://mp.weixin.qq.com/s/K12dpQRcvbQz2xgCfLP94w
ixxmu updated
9 months ago
-
Submitted via email:
The main issue seems to be the following error:
`gzip: reference_genomic.upper.fasta.cat: No such file or directory `
...
For example, when I run repeatmasker, it creat…
-
**Describe the issue**
When running RepeatMasker on a specific genome and library, trf fails with the message:
```
*** buffer overflow detected ***: trf terminated
sh: line 1: 3142675 Aborted …