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IN your paper ,you wrote "DLIR [19] and VTN [37] also stack their networks, though both limited to a small number of cascades. DLIR trains each cascade one by one, i.e., after fixing the weights of p…
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Hello,
I'm comparing environmental microbial samples to the ARG database,but one of samples wrong.
When I use the following command :
"last-train -P8 -Q0 mydb CH05.fa > reads.train"
It reported …
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By visually inspecting the alignments (using `samtools tview`, there are some regions which seems to have bad alignments: the reason seems to be that `Markduplicates` changes the sequence in aligned f…
bunop updated
2 hours ago
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If the alignments are invalid (say, because you concatenate the alignments with an untokenized version of the input corpus), Thrax never really tells you, it will just barf at some point down the road…
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We make use of the [ODA IFC SDK](https://www.opendesign.com/products/ifc-sdk) and the [ODA viewer](https://www.opendesign.com/guestfiles/oda_viewer) for our implementations and testing.
Linked bel…
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Hi, I use parasail local alignment function, and want to get all hits of local alignments(the template indeed contains multiple similar regions), but it seems just output the best one, what should I d…
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@dosumis @mmc46 I have a few aligned images we don't seem to be using and I'm not sure why:
CacheroOstrovsky2010:
pSP-f_F.nrrd
![psp-f_f](https://cloud.githubusercontent.com/assets/4630768/641098…
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Is _Algorithm 2: relaxed alignment_ included in this repository, since I could only see examples for categorical case. thank you.
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Dear developers,
Thanks very much for this excellent software. I encountered these redundant local alignments after postprocessing (see the figure). These alignments are several-residue shifted wit…
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Hi,
Kaldi scripts usually also generate alignments with lattices. You have both lat._.gz and ali._.gz files.
While in the offline transcriber, we only have the lattices as outputs. Is there any way…