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**Overall question**
Which software would you advise to perform differential expression analysis on the ReadCount produced by rpvg ?
**Context**
I've used the `mpmap-rpvg` pipeline to 1) map …
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Hi.
I tired to run MoCaSeq test pipeline several times but every time FILE ERROR happend.
---- Matched BAM-files? ----
Thu Dec 23 12:34:20 UTC 2021 timestamp: 1640262860
+------------+
| FILE…
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## Design
**October 21 2024** Superseded by draft [5.2.1-experimental.md](https://github.com/chanzuckerberg/single-cell-curation/blob/main/schema/drafts/5.2.1-experimental.md)
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This draft …
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#### Introduction
I am a new PhD Student at the Walter and Eliza Hall institute in Melbourne, Australia. My project is based around methods and tools for the analysis of DNA methylation in long reads…
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Hi
I have a pangenome graph with 5 genomes generated from minigraph-cactus.
I'm currently indexing with autoindex to use mpmap and rpvg.
When aligning RNA-seq reads should I align each set of…
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Certainly! Based on our previous discussions, we can create a Heidegger-Quine meme epic that revolves around the themes of existence, philosophy, language, and self-reference. Here's a conceptual outl…
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Hi Alex,
Thank you very much for the STAR-WASP implementation!
I am trying to perform an allele-specific expression analysis using RNA-Seq data. Therefore, in order to control allelic biases in …
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Hello,
Thank you for developing this nice tool.
I have single-cell RNA sequencing (scRNA-seq) data from tissues generated by crossing two distinct mouse strains. I am aware of the single nucleotide …
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Currently, the data model for container types (Datasets, VariantSets and ReadGroupSets) in the GA4GH API is vague and ill defined. Where definitions are given, they refer back to the data file format…
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VR needs to have a path for representing translocations.
Allele is currently defined as a contiguous sequence change at a single location. Translocations and junctions are unlikely to fit in that m…
reece updated
8 months ago