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Hi, the database files were quite large. I have download AlphaFold2 related databases and want to re-use it to save disk on HPC.
Cound you show us the full structure of directory and files of decompr…
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I'm getting following error:
raise ReadTimeoutError(self._pool, None, "Read timed out.")
urllib3.exceptions.ReadTimeoutError: HTTPSConnectionPool(host='api.colabfold.com', port=443): Read timed o…
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I found that an additional dimension representing the number of iterations was added to the input data. I'm wondering what is the purpose of this dimension? Will all model parameters also increase in …
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Hi, I have read your code and the formula in the supplementary of AlphaFold2, then found a problem. In Algorithm 28 of the supplementary, xij = (Ti ^ -1) ◦ xj, and the (Ti ^ -1) ◦ xj is defined as (R…
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The Environment:
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Running on Docker 20.10.12-3 on RHEL 7.9 with 4x NVIDIA Corporation GV100GL [Tesla V100 PCIe 32GB] cards.
CUDA version on this host is 11.4.
I also get this v…
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Hello.
I recently installed the newest version of localcolabfold (v1.5.5) on a server with 152 CPU cores and 4 NVIDIA gpus. Installation was carried out following localcolabfold installation scrip…
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IN:05282509
For Young GPU pilot users.
Contains fork of AlphaFold2 without the local databases.
1.3.0 is current release.
https://github.com/YoshitakaMo/localcolabfold
License: MIT
Requ…
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![image](https://user-images.githubusercontent.com/64191224/186342357-af479df4-6bf9-46fa-8a45-a86534511c24.png)
Recently, this problem has occurred in all runs
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Hello, thank you for great research.
In the AlphaLink paper, i think that you test without MSA in Fig.2 (e,f).
than, how can we make the dataset without MSA.
In my work, I have some test set …
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### 🚀 The feature, motivation and pitch
I want to do a sort of batched sparse-sparse matrix multiplication, but specifically in the scenario where I have two hybrid sparse coo tensors of the shape (N…