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When I run the bacterial genreads wrapper script I get the following error message:
```
$python bacterial_genreads_wrapper.py -r Escherichia_coli.fa -i 40 -g 3 -k 0.25 -c 40
Using default sequencin…
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Hello Diego,
I have a multiple alignment of 3000 bacterial genomes. Full alignment is about 5 Mb long, but only 50k sites are polymorphic (about 20k are AGCT only). Should I use full alignment or …
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Found dalliance and DAS while looking around for genome browsers, and it's definitely the coolest-looking one I've found. However, despite billing itself as a general purpose genome browser, it seems…
kueda updated
13 years ago
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Hi,
I am trying to run sRNARFTarget with a group of sRNA's against bacterial genomes. I am running into an issue with the initial command: nextflow run sRNARFTarget.nf --s sRNA.fasta --m mRNA.fast…
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Hello! I'm enjoying using Mash to characterize population structure for my set of bacterial genomes. Thank you for making this software!
As it turns out, I have some very closely related strains …
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Hi,
I'm trying out this tool with a simple setup of a few bacterial genomes which I have aligned (progressively, i.e. not ava) w/minimap2 with the proper flags. I cat'ed the PAFs together (for A vs…
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Hi
Any estimate on when we can expect to get methylation models for kit 12? I have experienced a growing interest in getting bacterial genomes with methylation profiling after kit 12 showed that na…
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Hello,
This is Min-Soo Kim who is interested in your FCP. I am trying to do local installing the FCP, but I got an error at the step for NCBI bacterial and archaeal genome download.
I realized that …
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**Describe the bug**
When I used METABOLIC-C.pl , I met some bugs：
This is the **METABOLIC_log.log**：
[2022-10-30 19:50:08] The Prodigal annotation is running...
[2022-10-30 19:50:34] The Prodig…
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We just run `twopaco` for thousands of bacterial genomes and now it's at:
```
Round 0, 0:4398046511104
Pass Filling Filtering
```
However, when we look at `top` we see that while its loaded in…