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pert_data.prepare_split(split = 'simulation_single', seed=1) # get data split with seed
pert_data.get_dataloader(batch_size = 32, test_batch_size = 128) # prepare data loader
This gives Value Erro…
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Ion will create test model
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Hello, thanks for this. This is really cool.
You might be aware of the [sbml test suite](https://github.com/sbmlteam/sbml-test-suite), which would be great to test how much coverage this package ha…
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Hello everyone,
I did a workaround for models with one compartment or many but with rules only referring to one compartment. For instance, I took the model MODEL1608100000 from Biomodels. It has tw…
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We need a good story/link between our proposal and biomed and related fields that NIH and WT mainly operate in.
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To complement the benchmarks, it would be good to have a few realistic but "difficult" test models, to check that the GUI remains usable and to identify potential performance bottlenecks, e.g. models …
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I get a dependency conflict when I install `biomodels` after I have installed MIRA via `python3 -m pip install git+https://github.com/indralab/mira.git`
```
Installing collected packages: pydantic…
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Add support/recommendations for licence info for individual projects.
Add guidelines for these, discussion of the issues/types of licence available.
**Questions**
Are model codes a different kett…
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iBioSim Version 3.0.0
Operating system: Windows 10
Bug reported by: micotner9@gmail.com
Description:
When trying to preform a reaction-based abstraction on my model using the SSA-Direct (Dynamic) s…
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- [x] Constant species
- [x] Parameters
- [ ] Species and parameters set via assignment rules
- [x] Reaction fluxes
- [x] Compartment sizes