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On **2024-01-18** we met with **Paul Taylor** and **Daniel Glen** of the Scientific and Statistical Computing Core at NIMH. Paul and Daniel are among the core developers and maintainers of [AFNI](http…
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Across all packages, I would suggest we should:
- always NOT ship any qt backend in `[napari]` optional dependencies to follow [napari plugin best practice](https://napari.org/stable/plugins/best_pra…
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**Is your feature request related to a problem? Please describe.**
I feel at the moment atlas integration is a bit complex. It seems like the atlas integration scripts can become a bit unwieldy, with…
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related pubblication: https://www.nature.com/articles/s41467-024-53254-w
data: https://pennstateoffice365-my.sharepoint.com/:f:/g/personal/yuk17_psu_edu/EmCllFDonwtLvDD0xgWd7QYBuzVVvnSv4oKpUy7F9bx75Q…
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There are some problems that would fit this tool, but cannot be performed on downsampled data, such as segmenting out total labelled cell volumes (see [image.sc post](https://forum.image.sc/t/use-regi…
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https://doi.org/10.1007/s12021-023-09623-9
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Could we leverage [TemplateFlow](https://github.com/templateflow) somehow?
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Right now the 3D mesh files for a lot of the atlases are provided by the uploader, and have a lot variability in quality across the different atlases. Building the 3D meshes from the annotations in a …
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Large arrays (e.g. `atlas._reference`) are only loaded into memory when needed, however they are never deleted. It would be useful to have a method to remove these from memory, e.g. in the following s…