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maven fails because it looks for the onejar plugin in GoogleCode repo. GoogleCode is now dead.
A new version of the plugin appears to be available in standard maven repository. When change the gro…
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From the gene.json file (https://data.bridgedb.org/gene.json), the following two .bridge files do not download:
- Ec_Derby_Ensembl_91.bridge
- Mx_Derby_Ensembl_85.bridge
Because of this, the Dock…
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Send entry to HMDB team to check:
Entry HMDB0010337 (named 6-Dehydrotestosterone glucuronide) contains the description of thymine (HMDB0000262), as well as a link to the same ChEBI entry (CHEBI:178…
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While working on the DSMN-figures, some WD-IDs didn't have a name connected to them (for which I used the names.rq query).
Examples (which we could use to extend the query):
- [ ] https://www.wikida…
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The speed of the service, even for the demo data, is too slow. Responses should appear with 1 second for mapping sets up to 1000 identifiers. For the demo data, it should be there instantaneously (
egonw updated
5 years ago
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Stub recipe exists at https://github.com/FAIRplus/the-fair-cookbook/blob/identifiers/docs/content/recipes/findability/identifier-services/identifier-mapping.md
This recipe should cover the use of B…
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It starts up fine, but I notice this NPE (with two lines of context):
```
Bundle com.sun.xml.bind.jaxb-osgi started
Core Bundle 4 with location jar:file:/home/egonw/Downloads/pathvisio.jar!/org.b…
egonw updated
2 years ago
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egonw updated
3 months ago
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I would suggest to split the layout from the content fully. That would also mean no HTML tags in the JSON field content, like in https://raw.githubusercontent.com/youphendriks/TGX-overview/refs/heads/…
egonw updated
3 weeks ago
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> @egonw In https://www.wikipathways.org/index.php/Pathway:WP3172, the pathway gastric pepsin release links to https://www.wikipathways.org/instance/WP2601, and Gastric Gastrin Release links to https:…
egonw updated
2 years ago