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Hi Thanks for the nice tool! When dealing with many genomes, e..g 300, the produced METABOLIC_result.xlsx cannot be opened, saying this file is corrupt and cannot be opened. For dealing with 2 or 3 ge…
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Dear Jon,
Thank for the latest release of **funannotate**. I tried it on _Linum usitatissimum_ genome and almost everything went fine. However, InterProScan search is still running for 10+ days and…
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Hi,
first of all thank you for SACCHARIS, it really makes it easier to characterize CAZymes.
I have been using it quite a bit lately and for most families Saccharis runs fine. Now I have come acro…
reslp updated
4 years ago
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I tried to parse .bib files exported from scopus today but ended up with a total mess of column names (see below).
``` r
bib_string No coercion to numeric applied.
#> # A tibble: …
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**Are you using the latest release?**
If you are not using the latest release of funannotate, please upgrade, if bug persists then report here.
**Describe the bug**
A clear and concise descriptio…
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## Expected Behavior
You run the same command with 1, 2 or more cores, and the outputfile is the same.
## Current Behavior
The output file slightly differs.
For a small benchmark, I ran blast, d…
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Hi Jon - I'm using funannotate v1.7.1 with the sample data:
`$funannotate test -t all --cpus 16`
`$funannotate compare` test failed (NB. but successfully completes everything prior)
[01:07 PM]: M…
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When running the command:
`funannotate annotate --input My_bug --sbt template.sbt \`
` --antismash ./My_bug/annotate_misc/antiSMASH.results.gbk \`
` --iprscan ./My_bug/annotate_misc/iprscan.xml \`
…
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The output information a dbCAN run gives you for Hotpep and HMMER is less that a solo run of both would give you. Why is this the case?
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I am trying to use the "annotate" function with the latest version I got from git clone by using only a gff3 and genome fasta file. I had to revert to use some old reference genomes due to some confli…