-
Hi everyone !
We are trying to use your API to convert cdna to genomic position. Overall, it's working pretty fine, but we had a problem with one conversion :
https://v3.mutalyzer.nl/positionconve…
-
I met an error like this when I try to update me annotation using Launch_PASA_pipeline.pl, please help me fix it or give me some advice.
* [Fri Sep 15 01:56:05 2023] Running CMD: /home/MCY/App/PASApi…
-
Dear Mr/Mrs,
I am trying to combine data from two PacBio runs: DNA (10kb) + cDNA (10kb), these regions overlap each other partially and I would like to phase them based on short-tandem repeats and …
-
I am getting the following error when running fusion snakemake.
```
rule loose_fusions: …
f0t1h updated
2 years ago
-
- [ ] check the runinfo to make sure the sample can be combined (i.e. same pairedness, insert size, read length)
- [ ] make sure we don't process the same file twice
- [ ] concatenate output file…
-
Hello,
Thank you for providing such a great tool!
For single exon gene/tx reconstructed by bambu, I was expecting them to be unstranded with the cDNA protocol (which is the case) but correctly s…
-
### Suggestion Description
As new instructions/features are added with each new arch, it is useful to know the target architecture at compile time to employ separate code paths. For example: FP64 M…
-
A lot of the times when we are assessing our samples before we move on to fragmenting cDNA in to fragments, we look at the distribution of full length cDNA using a Bioanalyzer.
See for example panel …
-
Dear all,
I'm still quite a newbie to phyloseq and R, currently I'm struggling with the issue that I can't structure my heatmap (see picture attached) in the way I want it. The issue is that I want t…
-
Hi there,
I have a question about the following Kallisto code: is it appropriate for generating index and reference files for single nuclear DropSeq?
“kb ref -i index.idx -g t2g.txt -f1 cdna.f…