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Hi,
I am new to Clonal evolution(so please pardon me if my doubt is naive). I have tried Clonefinder, MixPhy, and QuantumClone. With Clonefinder, and MixPhy I was able to get individual SNV's mutat…
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Hi all,
I was wondering if MGEfinder can be used in samples that are not fully clonal? e.g. have you tested whether MGEfinder can detect MGEs with different levels of "purity" of the sample?
Sp…
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Analyses generally will be separated into three groups- IDH wt, IDH mut, IDH mut 1p/19q
Include exomes when we can- number in abstract must be high as possible
@roelverhaak made a list of items t…
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Hi
Sorry, I found `inferHeterogeneity` function very helpful as I am working on clonality evolution in cancer; Plotting output of inferHeterogeneity gives separate results by sample, is it possible…
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### Background
The BIMIB/DCB group at the Universita` degli Studi di Milano-Bicocca has constructed a series of algorithms and tools to study the Cancer Evolution from Single Cells in the context o…
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Update the following URL to point to the GitHub repository of
the package you wish to submit to _Bioconductor_
- Repository: https://github.com/calabrialab/ISAnalytics
Confirm the following by …
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**Background**:
Genetic sequencing has confirmed that many cancers are evolutionarily heterogeneous. As a tumor grows, new mutations accumulate in individual cells, and as these cells replicate, the…
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Hello
I have non matched tumour samples of responders to chemotherapy and non-responders where responders and non-responders are different patients
I want to know why some patients response and…
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When using the example to test if SubClonalSelection.jl works properly, I encountered a MethodError regarding to ApproxBayes.ABCSMCModel.
Here is the command I used:
```
using Random
Random.se…
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Hi Christoffer.
I've run into an error and I'm hoping you could help me understand. I'm running superFreq with 2 individuals per cluster node, like so:
```r
superFreq::superFreq(
metaDat…