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I've attempted to install cnv_facets package using:
```
conda create -n facets
conda activate facets
conda install -c bioconda -c conda-forge cnv_facets
```
It's taking forever to install and …
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This is more of a request, but I am trying to use the CNV track for visualizing genome-wide QTL.
The issue I'm having is that it accepts only one color instead of a vector of colors, so all radial …
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**Work on this ticket at the same time as #23382.**
There are 8 name request types for conversion (CNV):
1. BECR - Benefit Company → BC Limited
2. BECV - BC Limited → Benefit Company
3. CCV - BC Lim…
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Talked to Lucas and Kerryn about CNV classifications
They use [2020 ACMG CNV guidelines](https://pubmed.ncbi.nlm.nih.gov/31690835/)
Biggest questions are:
* Is gene LOF
* If CNV is not whole gene, t…
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Hi, I used Sequenza to obtain the cellularity of adjacent and tumor tissues, using normal BAM files from white blood cells. I have a question: why is the cellularity of adjacent tissues higher than th…
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Hi,
I've encountered a sample where the CNV prediction throws an error. All other samples were processed fine. I couldn't find any (obvious) problems within the counts or the VCF file. The R-output i…
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Case in point:
```r
qseaSet@cnv
GRanges object with 3021 ranges and 8 metadata columns:
seqnames ranges strand | 10876287 5494098 5837175 5848539 5910748 sample_2…
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@FeiQin92
Hi，FeiQin
Good job and I am very interested in your research, but I have some questions. If I have a CNV matrix of scDNA-seq, can I use FLCNA to identify tumor subclones?
I am looki…
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I have been having an issue where the number of cnvs that are present in cnv_data.txt are much smaller than the number created by parse_cnvs.py
When I run parse_cnv.py on my tumor sample I get appr…
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Hi!
I'm currently looking for a solution to modify a Seabird CNV, remove some values (first values, last values, etc...) and go back to a CNV file. Is it possible with `python-ctd`?
I already chec…