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I ran jellyfish count on ccs reads produced from PacBio HiFi sequencing as follows:
```
jellyfish count -C -m 31 -s 1000 -t 10 -o marten.pb.jf m64047_240219_192555.ccs.fasta
```
And subsequent…
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Running a string kernel classifier on the clintox dataset, I can obtain an AUROC of 0.96. When I canonicalize the smiles, my AUROC drops to 0.69. This implies that there is a bias in the smiles format…
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You utilized the intensity of each feature as the dependent variable (Y), while treating the confounding factors (BMI, sex, IRIS, and ethnicity) as independent variables (X) to construct a linear regr…
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I wonder what procedure you recommend for conducting a sensitivity analysis for unmeasured confounding for GRF models?
E.g., I am looking into the _sensemakr_ package but that seems to require tha…
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### Error in differential_splicing(counts, numeric_x, confounders = confounders, : unused arguments (init = opt$init, seed = opt$seed). How to solve this problem?
- scripts: /leafcutter/scripts/l…
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### Error in differential_splicing(counts, numeric_x, confounders = confounders, : unused arguments (init = opt$init, seed = opt$seed). How to solve this problem?
- scripts: /leafcutter/scripts/l…
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Isolator looks like an interesting new approach, but most of my experiments cannot be described simply as disjoint groups of samples. Almost always, there are one or more other factors that I want to …
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I'm the author of a new paper out in TMLR, "Towards Backwards-Compatible Data with Confounded Domain Adaptation" (https://openreview.net/pdf?id=GSp2WC7q0r), which operates in the presence of both cova…
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some ideas are correlation, R^2, delta R^2 etc
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Hello,
This is a well done package but I was asking something to myself: would it be possible to confound scalars and 1x1 matrix ? As a scalar can be seen as a 1x1 matrix and conversely. Is this poss…